AT5G59150 (ATRAB-A2D, ATRABA2D, RABA2D)

Aliases : ATRAB-A2D, ATRABA2D, RABA2D

Description : RAB GTPase homolog A2D

Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G59150
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
Smo145965	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.02	Archaeplastida
Solyc12g014080.2.1	No alias	A-class RAB GTPase	0.01	Archaeplastida
Zm00001e006210_P001	No alias	A-class RAB GTPase	0.02	Archaeplastida
Zm00001e009615_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009504	cell plate	IDA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Neighborhood
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000280	nuclear division	IEP	Neighborhood
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
CC	GO:0000811	GINS complex	IEP	Neighborhood
CC	GO:0000814	ESCRT II complex	IEP	Neighborhood
BP	GO:0002683	negative regulation of immune system process	IEP	Neighborhood
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Neighborhood
MF	GO:0004750	ribulose-phosphate 3-epimerase activity	IEP	Neighborhood
MF	GO:0004834	tryptophan synthase activity	IEP	Neighborhood
CC	GO:0005680	anaphase-promoting complex	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006270	DNA replication initiation	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006555	methionine metabolic process	IEP	Neighborhood
BP	GO:0007129	synapsis	IEP	Neighborhood
CC	GO:0008290	F-actin capping protein complex	IEP	Neighborhood
MF	GO:0008395	steroid hydroxylase activity	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Neighborhood
BP	GO:0010113	negative regulation of systemic acquired resistance	IEP	Neighborhood
BP	GO:0010196	nonphotochemical quenching	IEP	Neighborhood
BP	GO:0010268	brassinosteroid homeostasis	IEP	Neighborhood
BP	GO:0010325	raffinose family oligosaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Neighborhood
BP	GO:0010500	transmitting tissue development	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Neighborhood
MF	GO:0030946	protein tyrosine phosphatase activity, metal-dependent	IEP	Neighborhood
CC	GO:0031261	DNA replication preinitiation complex	IEP	Neighborhood
BP	GO:0031333	negative regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032272	negative regulation of protein polymerization	IEP	Neighborhood
MF	GO:0033984	indole-3-glycerol-phosphate lyase activity	IEP	Neighborhood
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	Neighborhood
BP	GO:0043242	negative regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043901	negative regulation of multi-organism process	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
BP	GO:0045824	negative regulation of innate immune response	IEP	Neighborhood
MF	GO:0046976	histone methyltransferase activity (H3-K27 specific)	IEP	Neighborhood
BP	GO:0048285	organelle fission	IEP	Neighborhood
BP	GO:0048444	floral organ morphogenesis	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
BP	GO:0050777	negative regulation of immune response	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051693	actin filament capping	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0055070	copper ion homeostasis	IEP	Neighborhood
BP	GO:0055088	lipid homeostasis	IEP	Neighborhood
BP	GO:0061982	meiosis I cell cycle process	IEP	Neighborhood
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Neighborhood
BP	GO:0070734	histone H3-K27 methylation	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood
BP	GO:1901879	regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:1990066	energy quenching	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	14	174

External Links

No external refs found!

AT5G59150 (ATRAB-A2D, ATRABA2D, RABA2D)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation