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  5. MA_7197g0010

MA_7197g0010


Description : component ACINUS of RNA quality control Exon Junction complex


Gene families : OG0002679 (Archaeplastida) Phylogenetic Tree(s): OG0002679_tree ,
OG_05_0002265 (LandPlants) Phylogenetic Tree(s): OG_05_0002265_tree ,
OG_06_0002102 (SeedPlants) Phylogenetic Tree(s): OG_06_0002102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_7197g0010
Cluster HCCA: Cluster_420

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217580 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
AT4G39680 No alias SAP domain-containing protein 0.05 Archaeplastida
Cre03.g204950 No alias No description available 0.01 Archaeplastida
GSVIVT01008977001 No alias RNA processing.RNA quality control Exon Junction complex... 0.08 Archaeplastida
GSVIVT01022190001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
LOC_Os03g26630.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.02 Archaeplastida
LOC_Os07g43316.2 No alias component ACINUS of RNA quality control Exon Junction complex 0.02 Archaeplastida
Mp2g15000.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.04 Archaeplastida
Solyc04g072670.4.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.07 Archaeplastida
Zm00001e001848_P001 No alias component ACINUS of RNA quality control Exon Junction complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032552 RSB_motif 601 650
No external refs found!