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  5. AT5G62510

AT5G62510


Description : F-box family protein


Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62510
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT1G33010 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT1G53790 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT1G60370 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005372 water transmembrane transporter activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008143 poly(A) binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015204 urea transmembrane transporter activity IEP Neighborhood
MF GO:0015250 water channel activity IEP Neighborhood
BP GO:0015840 urea transport IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
BP GO:0019755 one-carbon compound transport IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048235 pollen sperm cell differentiation IEP Neighborhood
BP GO:0051865 protein autoubiquitination IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
MF GO:0098599 palmitoyl hydrolase activity IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 43 77
IPR013187 F-box-assoc_dom_typ3 247 372
No external refs found!