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  5. AT5G63180

AT5G63180


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G63180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
AT1G30350 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.05 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT4G13710 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G55720 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.01 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.02 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.02 Archaeplastida
MA_52869g0010 No alias no hits & (original description: none) 0.17 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c15_19060V3.1 No alias Pectin lyase-like superfamily protein 0.11 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Smo81909 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.01 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.08 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0000904 cell morphogenesis involved in differentiation IEP Neighborhood
BP GO:0006833 water transport IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009746 response to hexose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0010090 trichome morphogenesis IEP Neighborhood
BP GO:0010638 positive regulation of organelle organization IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0034284 response to monosaccharide IEP Neighborhood
BP GO:0042044 fluid transport IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 190 347
No external refs found!