AT5G63970

Description : Copine (Calcium-dependent phospholipid-binding protein) family

Gene families : OG0000512 (Archaeplastida) Phylogenetic Tree(s): OG0000512_tree ,
OG_05_0000782 (LandPlants) Phylogenetic Tree(s): OG_05_0000782_tree ,
OG_06_0000626 (SeedPlants) Phylogenetic Tree(s): OG_06_0000626_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G63970
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g011600	No alias	Acyl-CoA-binding domain-containing protein 4...	0.02	Archaeplastida
GSVIVT01000570001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
GSVIVT01002586001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_13018	No alias	RING-HC-class E3 ligase. ligating E3 protein (RGLG)	0.03	Archaeplastida
LOC_Os01g68060.1	No alias	RING-HC-class E3 ligase. ligating E3 protein (RGLG)	0.03	Archaeplastida
LOC_Os12g19030.1	No alias	RING-HC-class E3 ligase. ligating E3 protein (RGLG)	0.03	Archaeplastida
Mp6g16390.1	No alias	RING-HC-class E3 ligase. ligating E3 protein (RGLG)	0.03	Archaeplastida
Mp6g16430.1	No alias	RING-HC-class E3 ligase. ligating E3 protein (RGLG)	0.02	Archaeplastida
Solyc02g093520.3.1	No alias	RING-HC-class E3 ligase. ligating E3 protein (RGLG)	0.04	Archaeplastida
Zm00001e018895_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009611	response to wounding	IMP	Interproscan
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009690	cytokinin metabolic process	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0034754	cellular hormone metabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042742	defense response to bacterium	IMP	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	Neighborhood
BP	GO:0002237	response to molecule of bacterial origin	IEP	Neighborhood
MF	GO:0004364	glutathione transferase activity	IEP	Neighborhood
MF	GO:0004765	shikimate kinase activity	IEP	Neighborhood
MF	GO:0004846	urate oxidase activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006144	purine nucleobase metabolic process	IEP	Neighborhood
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Neighborhood
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0006208	pyrimidine nucleobase catabolic process	IEP	Neighborhood
BP	GO:0006212	uracil catabolic process	IEP	Neighborhood
BP	GO:0006635	fatty acid beta-oxidation	IEP	Neighborhood
BP	GO:0006743	ubiquinone metabolic process	IEP	Neighborhood
BP	GO:0006744	ubiquinone biosynthetic process	IEP	Neighborhood
BP	GO:0006817	phosphate ion transport	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0009112	nucleobase metabolic process	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015293	symporter activity	IEP	Neighborhood
MF	GO:0015294	solute:cation symporter activity	IEP	Neighborhood
MF	GO:0015295	solute:proton symporter activity	IEP	Neighborhood
MF	GO:0016034	maleylacetoacetate isomerase activity	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Neighborhood
MF	GO:0016663	oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017113	dihydropyrimidine dehydrogenase (NADP+) activity	IEP	Neighborhood
BP	GO:0019336	phenol-containing compound catabolic process	IEP	Neighborhood
BP	GO:0019395	fatty acid oxidation	IEP	Neighborhood
BP	GO:0019632	shikimate metabolic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0019860	uracil metabolic process	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0034440	lipid oxidation	IEP	Neighborhood
BP	GO:0042181	ketone biosynthetic process	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043562	cellular response to nitrogen levels	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
BP	GO:0046112	nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0046113	nucleobase catabolic process	IEP	Neighborhood
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Neighborhood
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:1900055	regulation of leaf senescence	IEP	Neighborhood
BP	GO:1900057	positive regulation of leaf senescence	IEP	Neighborhood
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Neighborhood
BP	GO:1901661	quinone metabolic process	IEP	Neighborhood
BP	GO:1901663	quinone biosynthetic process	IEP	Neighborhood
BP	GO:1901999	homogentisate metabolic process	IEP	Neighborhood
BP	GO:1902000	homogentisate catabolic process	IEP	Neighborhood
BP	GO:1905623	positive regulation of leaf development	IEP	Neighborhood
BP	GO:2000024	regulation of leaf development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010734	Copine	60	272

External Links

No external refs found!

AT5G63970

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation