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  5. MA_80959g0020

MA_80959g0020


Description : Pumilio homolog 24 OS=Arabidopsis thaliana (sp|q9lrz3|pum24_arath : 90.5)


Gene families : OG0005051 (Archaeplastida) Phylogenetic Tree(s): OG0005051_tree ,
OG_05_0019187 (LandPlants) Phylogenetic Tree(s): OG_05_0019187_tree ,
OG_06_0018620 (SeedPlants) Phylogenetic Tree(s): OG_06_0018620_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_80959g0020
Cluster HCCA: Cluster_454

Target Alias Description ECC score Gene Family Method Actions
AT3G16810 APUM24, PUM24 pumilio 24 0.03 Archaeplastida
Cre12.g528950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
GSVIVT01035090001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
LOC_Os03g61560.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.02 Archaeplastida
MA_9586059g0010 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp7g01710.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 Archaeplastida
Solyc01g065580.4.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.02 Archaeplastida
Zm00001e006271_P002 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003856 3-dehydroquinate synthase activity IEP Neighborhood
MF GO:0003937 IMP cyclohydrolase activity IEP Neighborhood
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006164 purine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072522 purine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012959 CPL_dom 115 144
No external refs found!