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  5. MA_8741g0010

MA_8741g0010


Description : Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana (sp|q9lnu6|ppr53_arath : 620.0)


Gene families : OG0005512 (Archaeplastida) Phylogenetic Tree(s): OG0005512_tree ,
OG_05_0094088 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0075126 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_8741g0010
Cluster HCCA: Cluster_399

Target Alias Description ECC score Gene Family Method Actions
Gb_18840 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_27979 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.1 Archaeplastida
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_175700g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo10568 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.06 Archaeplastida
Smo109820 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
Smo125156 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
Smo16655 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.03 Archaeplastida
Smo81428 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 Archaeplastida
Smo89100 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 199 228
IPR002885 Pentatricopeptide_repeat 445 468
IPR002885 Pentatricopeptide_repeat 173 197
IPR002885 Pentatricopeptide_repeat 548 571
IPR032867 DYW_dom 646 769
IPR002885 Pentatricopeptide_repeat 95 133
IPR002885 Pentatricopeptide_repeat 301 344
IPR002885 Pentatricopeptide_repeat 371 418
IPR002885 Pentatricopeptide_repeat 473 519
IPR002885 Pentatricopeptide_repeat 231 276
No external refs found!