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  5. AT1G27660

AT1G27660


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG0000624 (Archaeplastida) Phylogenetic Tree(s): OG0000624_tree ,
OG_05_0000347 (LandPlants) Phylogenetic Tree(s): OG_05_0000347_tree ,
OG_06_0000255 (SeedPlants) Phylogenetic Tree(s): OG_06_0000255_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G27660
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00103240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00167p00019840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G31050 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
GSVIVT01009761001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01010280001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 Archaeplastida
Gb_06063 No alias transcription factor (bHLH) 0.05 Archaeplastida
Gb_21995 No alias transcription factor (bHLH) 0.02 Archaeplastida
Gb_40387 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os02g17680.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os03g55220.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os05g14010.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os05g42180.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_504223g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
Mp2g19970.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc01g150101.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g079760.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc03g031450.3.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Solyc03g120530.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc04g080710.4.1 No alias transcription factor (bHLH) 0.07 Archaeplastida
Solyc06g066580.4.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc07g020960.3.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Solyc07g063830.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc10g006640.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e005748_P002 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e007719_P001 No alias transcription factor (bHLH) 0.01 Archaeplastida
Zm00001e010350_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e014179_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e016395_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e019609_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e027157_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e034854_P002 No alias transcription factor (bHLH) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0000254 C-4 methylsterol oxidase activity IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004557 alpha-galactosidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006084 acetyl-CoA metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006521 regulation of cellular amino acid metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006637 acyl-CoA metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0006677 glycosylceramide metabolic process IEP Neighborhood
BP GO:0006687 glycosphingolipid metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP Neighborhood
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008361 regulation of cell size IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
BP GO:0009832 plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009914 hormone transport IEP Neighborhood
BP GO:0009926 auxin polar transport IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010015 root morphogenesis IEP Neighborhood
BP GO:0010065 primary meristem tissue development IEP Neighborhood
BP GO:0010067 procambium histogenesis IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010623 programmed cell death involved in cell development IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0016137 glycoside metabolic process IEP Neighborhood
BP GO:0016139 glycoside catabolic process IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019377 glycolipid catabolic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0030149 sphingolipid catabolic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032352 positive regulation of hormone metabolic process IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032881 regulation of polysaccharide metabolic process IEP Neighborhood
BP GO:0032885 regulation of polysaccharide biosynthetic process IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033238 regulation of cellular amine metabolic process IEP Neighborhood
BP GO:0033240 positive regulation of cellular amine metabolic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0035383 thioester metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
CC GO:0045298 tubulin complex IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0045597 positive regulation of cell differentiation IEP Neighborhood
BP GO:0045764 positive regulation of cellular amino acid metabolic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0046477 glycosylceramide catabolic process IEP Neighborhood
BP GO:0046479 glycosphingolipid catabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046514 ceramide catabolic process IEP Neighborhood
BP GO:0048508 embryonic meristem development IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060918 auxin transport IEP Neighborhood
BP GO:0062013 positive regulation of small molecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP Neighborhood
BP GO:0080064 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0090355 positive regulation of auxin metabolic process IEP Neighborhood
BP GO:0090357 regulation of tryptophan metabolic process IEP Neighborhood
BP GO:0090358 positive regulation of tryptophan metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1900030 regulation of pectin biosynthetic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000652 regulation of secondary cell wall biogenesis IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!