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  5. AMTR_s00001p00069110

AMTR_s00001p00069110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.44

Description : Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007267 (Archaeplastida) Phylogenetic Tree(s): OG0007267_tree ,
OG_05_0005245 (LandPlants) Phylogenetic Tree(s): OG_05_0005245_tree ,
OG_06_0009021 (SeedPlants) Phylogenetic Tree(s): OG_06_0009021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00069110
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AT5G42310 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Archaeplastida
GSVIVT01013362001 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.05 Archaeplastida
Gb_11328 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida
LOC_Os07g36390.1 No alias plastidial mRNA processing factor (CRP1) 0.02 Archaeplastida
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.02 Archaeplastida
Smo135281 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.05 Archaeplastida
Zm00001e035192_P001 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Neighborhood
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 367
IPR002885 Pentatricopeptide_repeat 265 297
IPR002885 Pentatricopeptide_repeat 509 554
IPR002885 Pentatricopeptide_repeat 370 414
IPR002885 Pentatricopeptide_repeat 437 482
IPR002885 Pentatricopeptide_repeat 197 222
IPR002885 Pentatricopeptide_repeat 229 255
No external refs found!