AT1G27740 (RSL4)

Aliases : RSL4

Description : root hair defective 6-like 4

Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G27740
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00183410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
AT1G09530	PIF3, POC1, PAP3	phytochrome interacting factor 3	0.06	Archaeplastida
AT2G46970	PIL1	phytochrome interacting factor 3-like 1	0.06	Archaeplastida
AT3G21330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT3G50330	HEC2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.08	Archaeplastida
AT4G00050	UNE10	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
AT4G00120	GT140, IND1, IND, EDA33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.05	Archaeplastida
AT5G67060	HEC1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.07	Archaeplastida
GSVIVT01009479001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
GSVIVT01028516001	No alias	External stimuli response.light.red/far red light.PIF...	0.02	Archaeplastida
Gb_27869	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Gb_30387	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Gb_30839	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g02110.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os01g51140.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os03g10770.1	No alias	transcription factor (bHLH)	0.1	Archaeplastida
LOC_Os03g42100.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os06g06900.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os07g05010.2	No alias	transcription factor (bHLH). PIF red/far-red light...	0.02	Archaeplastida
LOC_Os07g39940.1	No alias	transcription factor (bHLH)	0.07	Archaeplastida
LOC_Os08g01700.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os09g28210.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os11g41640.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os12g32400.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os12g39850.1	No alias	transcription factor (bHLH)	0.08	Archaeplastida
MA_100071g0010	No alias	no hits & (original description: none)	0.08	Archaeplastida
MA_10156436g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_26114g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_78485g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_83500g0010	No alias	transcription factor (bHLH)	0.07	Archaeplastida
MA_88831g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Mp3g17350.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Mp3g17930.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Mp5g09710.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Mp6g21470.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Pp3c10_19020V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c16_21590V3.1	No alias	ROOT HAIR DEFECTIVE 6-LIKE 2	0.05	Archaeplastida
Pp3c17_15380V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c25_13740V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c3_28970V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Smo404767	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Smo409967	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Smo413232	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	Archaeplastida
Solyc01g107140.3.1	No alias	transcription factor (bHLH)	0.16	Archaeplastida
Solyc02g091440.2.1	No alias	transcription factor (bHLH)	0.07	Archaeplastida
Solyc03g044460.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc03g121240.1.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Solyc04g077960.1.1	No alias	transcription factor (bHLH)	0.14	Archaeplastida
Solyc09g005070.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc11g005780.3.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc12g088380.1.1	No alias	transcription factor (bHLH)	0.16	Archaeplastida
Zm00001e006917_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e015610_P001	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Zm00001e017430_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e019392_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e021883_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e025656_P001	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Zm00001e027758_P002	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e035422_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e038765_P001	No alias	transcription factor (bHLH)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	IMP	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	IMP	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048766	root hair initiation	IMP	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005548	phospholipid transporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006829	zinc ion transport	IEP	Neighborhood
BP	GO:0007043	cell-cell junction assembly	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008493	tetracycline transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008526	phosphatidylinositol transporter activity	IEP	Neighborhood
BP	GO:0009267	cellular response to starvation	IEP	Neighborhood
CC	GO:0009531	secondary cell wall	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
BP	GO:0010054	trichoblast differentiation	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010411	xyloglucan metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
MF	GO:0015665	alcohol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
BP	GO:0034329	cell junction assembly	IEP	Neighborhood
BP	GO:0034330	cell junction organization	IEP	Neighborhood
BP	GO:0035864	response to potassium ion	IEP	Neighborhood
BP	GO:0035865	cellular response to potassium ion	IEP	Neighborhood
BP	GO:0042594	response to starvation	IEP	Neighborhood
MF	GO:0042895	antibiotic transmembrane transporter activity	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044426	cell wall part	IEP	Neighborhood
CC	GO:0044462	external encapsulating structure part	IEP	Neighborhood
BP	GO:0045216	cell-cell junction organization	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
CC	GO:0048226	Casparian strip	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071365	cellular response to auxin stimulus	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
MF	GO:0072509	divalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0072732	cellular response to calcium ion starvation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	183	223

External Links

No external refs found!

AT1G27740 (RSL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation