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  5. MA_956160g0010

MA_956160g0010


Description : Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana (sp|q9fwa6|pp207_arath : 539.0)


Gene families : OG0003060 (Archaeplastida) Phylogenetic Tree(s): OG0003060_tree ,
OG_05_0094277 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0075332 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_956160g0010
Cluster HCCA: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
Gb_07754 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_24825 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_26159 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
Gb_32475 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.09 Archaeplastida
Mp1g25580.1 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.02 Archaeplastida
Zm00001e010701_P001 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 730 755
IPR002885 Pentatricopeptide_repeat 529 552
IPR002885 Pentatricopeptide_repeat 164 189
IPR002885 Pentatricopeptide_repeat 321 349
IPR002885 Pentatricopeptide_repeat 190 217
IPR002885 Pentatricopeptide_repeat 54 86
IPR002885 Pentatricopeptide_repeat 555 602
IPR002885 Pentatricopeptide_repeat 353 401
IPR002885 Pentatricopeptide_repeat 220 268
IPR002885 Pentatricopeptide_repeat 454 501
IPR002885 Pentatricopeptide_repeat 655 704
IPR002885 Pentatricopeptide_repeat 89 137
No external refs found!