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  5. AMTR_s00001p00240800

AMTR_s00001p00240800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.277

Description : Basic endochitinase A OS=Secale cereale


Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0041183 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0035626 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00240800
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AT2G43620 No alias Chitinase family protein 0.03 Archaeplastida
GSVIVT01031685001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 Archaeplastida
GSVIVT01035029001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 Archaeplastida
Gb_10203 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
Gb_29992 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os09g32080.2 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.02 Archaeplastida
LOC_Os10g39680.1 No alias Chitinase 8 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_4984466g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_726207g0010 No alias Chitinase-like protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp4g20470.1 No alias Basic endochitinase B OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c13_4480V3.1 No alias Chitinase family protein 0.02 Archaeplastida
Smo14768 No alias Chitinase 2 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Smo227948 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 Archaeplastida
Smo426710 No alias Endochitinase A OS=Zea mays 0.03 Archaeplastida
Solyc06g053380.3.1 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Solyc09g098540.3.1 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
Solyc10g074440.2.1 No alias Endochitinase OS=Solanum tuberosum (sp|p05315|chit_soltu : 491.0) 0.04 Archaeplastida
Zm00001e013318_P001 No alias Chitinase 9 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 1 77
No external refs found!