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  5. AMTR_s00001p00250710

AMTR_s00001p00250710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.317

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS10 component


Gene families : OG0001849 (Archaeplastida) Phylogenetic Tree(s): OG0001849_tree ,
OG_05_0001692 (LandPlants) Phylogenetic Tree(s): OG_05_0001692_tree ,
OG_06_0002148 (SeedPlants) Phylogenetic Tree(s): OG_06_0002148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00250710
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT4G25740 No alias RNA binding Plectin/S10 domain-containing protein 0.2 Archaeplastida
AT5G41520 No alias RNA binding Plectin/S10 domain-containing protein 0.13 Archaeplastida
AT5G52650 No alias RNA binding Plectin/S10 domain-containing protein 0.36 Archaeplastida
Cpa|evm.model.tig00001164.5 No alias 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica 0.23 Archaeplastida
Cre09.g411100 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01019409001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01028854001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Gb_10517 No alias component RPS10 of SSU proteome 0.17 Archaeplastida
LOC_Os01g73160.1 No alias component RPS10 of SSU proteome 0.15 Archaeplastida
LOC_Os02g34460.2 No alias component RPS10 of SSU proteome 0.03 Archaeplastida
LOC_Os04g35090.1 No alias component RPS10 of SSU proteome 0.28 Archaeplastida
MA_111018g0010 No alias component RPS10 of SSU proteome 0.11 Archaeplastida
MA_314020g0010 No alias component RPS10 of SSU proteome 0.14 Archaeplastida
Mp2g00580.1 No alias component RPS10 of SSU proteome 0.34 Archaeplastida
Pp3c10_21170V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.13 Archaeplastida
Pp3c10_990V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.22 Archaeplastida
Pp3c14_1810V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.27 Archaeplastida
Pp3c1_18400V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.3 Archaeplastida
Pp3c23_13100V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.16 Archaeplastida
Pp3c24_2340V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.14 Archaeplastida
Pp3c2_18620V3.1 No alias RNA binding Plectin/S10 domain-containing protein 0.29 Archaeplastida
Smo37555 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
Solyc01g099670.3.1 No alias component RPS10 of SSU proteome 0.26 Archaeplastida
Solyc12g096540.2.1 No alias component RPS10 of SSU proteome 0.23 Archaeplastida
Zm00001e008107_P001 No alias component RPS10 of SSU proteome 0.28 Archaeplastida
Zm00001e018554_P001 No alias No annotation 0.23 Archaeplastida
Zm00001e028280_P001 No alias component RPS10 of SSU proteome 0.3 Archaeplastida
Zm00001e040881_P001 No alias component RPS10 of SSU proteome 0.23 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 3 95
No external refs found!