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  5. ChrUn.fgenesh.mRNA.36

ChrUn.fgenesh.mRNA.36


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 340.0)


Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000560 (LandPlants) Phylogenetic Tree(s): OG_05_0000560_tree ,
OG_06_0002319 (SeedPlants) Phylogenetic Tree(s): OG_06_0002319_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrUn.fgenesh.mRNA.36
Cluster HCCA: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.7 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.32 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Cre03.g183950 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_05914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Gb_23035 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc06g150112.1.1 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 278 514
No external refs found!