LOC_Os01g04800.1

Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)

Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000701 (SeedPlants) Phylogenetic Tree(s): OG_06_0000701_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g04800.1
Cluster	HCCA: Cluster_183

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00238950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00018p00040300	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
AT1G13260	EDF4, RAV1	related to ABI3/VP1 1	0.03	Archaeplastida
AT1G51120	No alias	AP2/B3 transcription factor family protein	0.03	Archaeplastida
AT2G46870	NGA1	AP2/B3-like transcriptional factor family protein	0.04	Archaeplastida
AT3G11580	No alias	AP2/B3-like transcriptional factor family protein	0.05	Archaeplastida
GSVIVT01011947001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_18035	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
LOC_Os06g01860.1	No alias	transcription factor (RAV/NGATHA)	0.05	Archaeplastida
LOC_Os08g06120.1	No alias	transcription factor (RAV/NGATHA)	0.05	Archaeplastida
LOC_Os11g05740.1	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
MA_18923g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.09	Archaeplastida
MA_246350g0010	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
MA_3503583g0010	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
MA_3834g0010	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
MA_5039g0010	No alias	transcription factor (RAV/NGATHA)	0.02	Archaeplastida
MA_865117g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Mp2g22250.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Pp3c1_16700V3.1	No alias	related to ABI3/VP1 1	0.04	Archaeplastida
Pp3c2_23660V3.1	No alias	AP2/B3 transcription factor family protein	0.04	Archaeplastida
Solyc04g007000.2.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	Archaeplastida
Solyc05g004000.1.1	No alias	transcription factor (RAV/NGATHA)	0.02	Archaeplastida
Solyc08g013690.1.1	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Zm00001e000156_P001	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Zm00001e016956_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Archaeplastida
Zm00001e020092_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	Archaeplastida
Zm00001e023240_P001	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Zm00001e032325_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Zm00001e038099_P001	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
Zm00001e039393_P002	No alias	transcription factor (RAV/NGATHA)	0.05	Archaeplastida
Zm00001e040214_P001	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Zm00001e041372_P001	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	182	280
IPR001471	AP2/ERF_dom	67	115

External Links

No external refs found!

LOC_Os01g04800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation