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  5. LOC_Os01g05860.1

LOC_Os01g05860.1


Description : Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana (sp|q9lil5|pp233_arath : 438.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0000850 (SeedPlants) Phylogenetic Tree(s): OG_06_0000850_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g05860.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00263440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 Archaeplastida
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G80880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G22670 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G14820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.17 Archaeplastida
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.11 Archaeplastida
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.09 Archaeplastida
GSVIVT01026463001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 Archaeplastida
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.17 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
LOC_Os01g60010.1 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.08 Archaeplastida
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 Archaeplastida
MA_39587g0010 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 Archaeplastida
MA_455059g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_6218g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.02 Archaeplastida
MA_9740107g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 Archaeplastida
MA_98353g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.05 Archaeplastida
Solyc03g117570.3.1 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.11 Archaeplastida
Solyc05g008330.3.1 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida
Solyc11g070040.3.1 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e005758_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.06 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Zm00001e025816_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e026896_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.05 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.06 Archaeplastida
Zm00001e031478_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
CC GO:0030915 Smc5-Smc6 complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
CC GO:0106068 SUMO ligase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 356 400
IPR002885 Pentatricopeptide_repeat 252 298
IPR002885 Pentatricopeptide_repeat 426 454
IPR002885 Pentatricopeptide_repeat 325 353
IPR002885 Pentatricopeptide_repeat 461 489
No external refs found!