LOC_Os01g08540.1

Description : component MSH7 of MSH2-x mismatch repair heterodimers

Gene families : OG0001515 (Archaeplastida) Phylogenetic Tree(s): OG0001515_tree ,
OG_05_0006412 (LandPlants) Phylogenetic Tree(s): OG_05_0006412_tree ,
OG_06_0007207 (SeedPlants) Phylogenetic Tree(s): OG_06_0007207_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g08540.1
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00029910	evm_27.TU.AmTr_v1...	DNA damage response.DNA repair mechanisms.mismatch...	0.05	Archaeplastida
AMTR_s00078p00191830	evm_27.TU.AmTr_v1...	DNA damage response.DNA repair mechanisms.mismatch...	0.08	Archaeplastida
AT3G24495	MSH7, ATMSH7, MSH6-2	MUTS homolog 7	0.05	Archaeplastida
Cpa\|evm.model.tig00000489.16	No alias	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre05.g235750	No alias	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.06	Archaeplastida
GSVIVT01015407001	No alias	DNA damage response.DNA repair mechanisms.mismatch...	0.09	Archaeplastida
Gb_18995	No alias	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_10429110g0010	No alias	component MSH6 of MSH2-x mismatch repair heterodimers	0.03	Archaeplastida
MA_10435491g0030	No alias	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_214705g0010	No alias	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.07	Archaeplastida
Mp2g14640.1	No alias	component MSH6 of MSH2-x mismatch repair heterodimers	0.02	Archaeplastida
Mp7g16850.1	No alias	component MSH7 of MSH2-x mismatch repair heterodimers	0.1	Archaeplastida
Pp3c9_1020V3.1	No alias	MUTS homolog 7	0.01	Archaeplastida
Solyc01g079520.3.1	No alias	component MSH6 of MSH2-x mismatch repair heterodimers	0.09	Archaeplastida
Solyc07g018350.2.1	No alias	component MSH7 of MSH2-x mismatch repair heterodimers	0.02	Archaeplastida
Zm00001e016678_P004	No alias	component MSH7 of MSH2-x mismatch repair heterodimers	0.08	Archaeplastida
Zm00001e034087_P001	No alias	component MSH6 of MSH2-x mismatch repair heterodimers	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000726	non-recombinational repair	IEP	Neighborhood
CC	GO:0000776	kinetochore	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006270	DNA replication initiation	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0008156	negative regulation of DNA replication	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
CC	GO:0030915	Smc5-Smc6 complex	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034508	centromere complex assembly	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045005	DNA-dependent DNA replication maintenance of fidelity	IEP	Neighborhood
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048478	replication fork protection	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Neighborhood
CC	GO:0106068	SUMO ligase complex	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007696	DNA_mismatch_repair_MutS_core	692	907
IPR000432	DNA_mismatch_repair_MutS_C	969	1158
IPR007860	DNA_mmatch_repair_MutS_con_dom	537	674
IPR007695	DNA_mismatch_repair_MutS-lik_N	407	517

External Links

No external refs found!

LOC_Os01g08540.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation