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  5. LOC_Os01g11580.1

LOC_Os01g11580.1


Description : transcriptional co-activator (BET/GTE)


Gene families : OG0000250 (Archaeplastida) Phylogenetic Tree(s): OG0000250_tree ,
OG_05_0000330 (LandPlants) Phylogenetic Tree(s): OG_05_0000330_tree ,
OG_06_0000655 (SeedPlants) Phylogenetic Tree(s): OG_06_0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g11580.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G06230 GTE4 global transcription factor group E4 0.1 Archaeplastida
AT3G27260 GTE8 global transcription factor group E8 0.03 Archaeplastida
Cre08.g367300 No alias Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01014233001 No alias Transcription factor GTE4 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01020670001 No alias Transcription factor GTE4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_04671 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
LOC_Os07g32420.1 No alias transcriptional co-activator (BET/GTE) 0.04 Archaeplastida
MA_18020g0010 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
Pp3c12_15290V3.1 No alias bromodomain and extraterminal domain protein 10 0.03 Archaeplastida
Solyc07g062660.4.1 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
Solyc09g090370.3.1 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
Solyc10g008070.4.1 No alias Transcription factor GTE4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e009037_P001 No alias transcriptional co-activator (BET/GTE) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR001487 Bromodomain 1 77
IPR027353 NET_dom 159 221
No external refs found!