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  5. LOC_Os01g13080.1

LOC_Os01g13080.1


Description : component RPP3 of LSU proteome component


Gene families : OG0003127 (Archaeplastida) Phylogenetic Tree(s): OG0003127_tree ,
OG_05_0002232 (LandPlants) Phylogenetic Tree(s): OG_05_0002232_tree ,
OG_06_0002853 (SeedPlants) Phylogenetic Tree(s): OG_06_0002853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g13080.1
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00182570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AT4G25890 No alias 60S acidic ribosomal protein family 0.15 Archaeplastida
AT5G57290 No alias 60S acidic ribosomal protein family 0.11 Archaeplastida
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Gb_31564 No alias component RPP3 of LSU proteome component 0.06 Archaeplastida
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.05 Archaeplastida
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.1 Archaeplastida
Pp3c21_16160V3.1 No alias 60S acidic ribosomal protein family 0.11 Archaeplastida
Pp3c22_2920V3.1 No alias 60S acidic ribosomal protein family 0.03 Archaeplastida
Smo105823 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Solyc07g009330.4.1 No alias component RPP3 of LSU proteome component 0.06 Archaeplastida
Zm00001e013180_P001 No alias component RPP3 of LSU proteome component 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0006449 regulation of translational termination IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP
Zm00001e013180_P001 No alias component RPP3 of LSU proteome component 0.07