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  5. LOC_Os01g13140.1

LOC_Os01g13140.1


Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 198.0)


Gene families : OG0000380 (Archaeplastida) Phylogenetic Tree(s): OG0000380_tree ,
OG_05_0012885 (LandPlants) Phylogenetic Tree(s): OG_05_0012885_tree ,
OG_06_0012912 (SeedPlants) Phylogenetic Tree(s): OG_06_0012912_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g13140.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256130 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00109p00135240 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00156p00066850 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.09 Archaeplastida
AT1G49450 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
AT3G51930 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
GSVIVT01007589001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01007825001 No alias No description available 0.04 Archaeplastida
GSVIVT01035639001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_26403 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10431396g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_28858g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.08 Archaeplastida
MA_370291g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c11_2770V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Pp3c4_25840V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Archaeplastida
Solyc01g068250.2.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc01g109120.3.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g044320.2.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc12g088980.2.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e003105_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e005608_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e007790_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e012074_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e026116_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 440 483
IPR001680 WD40_repeat 292 328
IPR001680 WD40_repeat 397 428
No external refs found!