LOC_Os01g19694.1

Description : transcription factor (KNOX)

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g19694.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00178300	evm_27.TU.AmTr_v1...	Homeobox protein HD1 OS=Brassica napus	0.03	Archaeplastida
AMTR_s00045p00169620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00085p00165180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.08	Archaeplastida
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.04	Archaeplastida
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.05	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01004811001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01007715001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
GSVIVT01009273001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01013790001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01018257001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01030488001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01031241001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Gb_00573	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Gb_10887	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os03g51710.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
LOC_Os03g56140.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os07g03770.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
MA_10428500g0010	No alias	transcription factor (KNOX)	0.02	Archaeplastida
MA_114226g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c18_18750V3.1	No alias	KNOTTED1-like homeobox gene 6	0.02	Archaeplastida
Pp3c19_5610V3.1	No alias	No annotation	0.03	Archaeplastida
Pp3c21_10320V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.02	Archaeplastida
Pp3c6_1550V3.1	No alias	KNOTTED1-like homeobox gene 3	0.05	Archaeplastida
Smo159366	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Solyc01g100510.4.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Solyc02g081120.4.1	No alias	transcription factor (KNOX)	0.12	Archaeplastida
Solyc05g005090.4.1	No alias	transcription factor (KNOX)	0.09	Archaeplastida
Solyc08g041820.3.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e005170_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e005545_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e011538_P001	No alias	transcription factor (KNOX)	0.06	Archaeplastida
Zm00001e012293_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e012294_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.06	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e032761_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	188	209
IPR005541	KNOX2	94	141
IPR005540	KNOX1	43	83
IPR008422	Homeobox_KN_domain	228	267

External Links

No external refs found!

LOC_Os01g19694.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation