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  5. AMTR_s00002p00151080

AMTR_s00002p00151080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.120

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL37a component


Gene families : OG0001934 (Archaeplastida) Phylogenetic Tree(s): OG0001934_tree ,
OG_05_0002267 (LandPlants) Phylogenetic Tree(s): OG_05_0002267_tree ,
OG_06_0003026 (SeedPlants) Phylogenetic Tree(s): OG_06_0003026_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00151080
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AT3G60245 No alias Zinc-binding ribosomal protein family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000718.64 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Cre06.g257150 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01013278001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
GSVIVT01018328001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
LOC_Os05g48320.1 No alias component RPL37a of LSU proteome component 0.04 Archaeplastida
MA_158457g0010 No alias component RPL37a of LSU proteome component 0.03 Archaeplastida
MA_320643g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp5g08340.1 No alias component RPL37a of LSU proteome component 0.03 Archaeplastida
Pp3c11_2550V3.1 No alias Zinc-binding ribosomal protein family protein 0.05 Archaeplastida
Pp3c1_1530V3.1 No alias Zinc-binding ribosomal protein family protein 0.04 Archaeplastida
Pp3c2_34770V3.1 No alias Zinc-binding ribosomal protein family protein 0.04 Archaeplastida
Pp3c3_1620V3.1 No alias Zinc-binding ribosomal protein family protein 0.03 Archaeplastida
Pp3c7_21150V3.1 No alias Zinc-binding ribosomal protein family protein 0.05 Archaeplastida
Smo227221 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Zm00001e008395_P001 No alias component RPL37a of LSU proteome component 0.03 Archaeplastida
Zm00001e013684_P001 No alias component RPL37a of LSU proteome component 0.03 Archaeplastida
Zm00001e025201_P002 No alias component RPL37a of LSU proteome component 0.08 Archaeplastida
Zm00001e026482_P001 No alias component RPL37a of LSU proteome component 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002674 Ribosomal_L37ae 5 81
No external refs found!