1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g43160.1

LOC_Os01g43160.1


Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 397.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 65.4)


Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0005547 (SeedPlants) Phylogenetic Tree(s): OG_06_0005547_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g43160.1
Cluster HCCA: Cluster_300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00258260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00003p00141260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 Archaeplastida
AMTR_s00107p00122980 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AT1G19170 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G23900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G06770 No alias Pectin lyase-like superfamily protein 0.1 Archaeplastida
AT3G42950 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G23820 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01015044001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01019405001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01019516001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 Archaeplastida
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.06 Archaeplastida
GSVIVT01028057001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 Archaeplastida
Gb_23153 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Gb_39001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 Archaeplastida
MA_10430135g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
MA_10435166g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10436451g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Pp3c19_14240V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c4_24360V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c6_7160V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo78556 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
Solyc05g049980.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Solyc07g042160.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
Solyc08g081480.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Solyc09g075460.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Zm00001e023760_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
Zm00001e026646_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e029809_P002 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0035434 copper ion transmembrane transport IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 140 418
No external refs found!