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  5. LOC_Os01g44970.1

LOC_Os01g44970.1


Description : polygalacturonase (PGX1)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0001748 (SeedPlants) Phylogenetic Tree(s): OG_06_0001748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g44970.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AMTR_s00074p00182020 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G10640 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT1G23460 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G56710 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G60590 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G44840 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.04 Archaeplastida
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01017302001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01032117001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033303001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033360001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
Gb_05788 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g46510.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
MA_285723g0010 No alias Polygalacturonase OS=Persea americana... 0.03 Archaeplastida
MA_90135g0010 No alias Polygalacturonase OS=Chamaecyparis obtusa... 0.02 Archaeplastida
MA_9231294g0010 No alias No annotation 0.04 Archaeplastida
Pp3c23_3890V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.03 Archaeplastida
Solyc10g080210.2.1 No alias polygalacturonase (QRT2) 0.02 Archaeplastida
Solyc12g019130.3.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Zm00001e006092_P001 No alias polygalacturonase (QRT2) 0.02 Archaeplastida
Zm00001e006097_P001 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
Zm00001e017465_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e017565_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e026160_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027946_P001 No alias polygalacturonase (PGX1) 0.05 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e036989_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0052646 alditol phosphate metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 169 489
No external refs found!