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  5. LOC_Os01g52390.1

LOC_Os01g52390.1


Description : RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum (sp|q9sq56|rgga_tobac : 98.2)


Gene families : OG0002128 (Archaeplastida) Phylogenetic Tree(s): OG0002128_tree ,
OG_05_0001404 (LandPlants) Phylogenetic Tree(s): OG_05_0001404_tree ,
OG_06_0002073 (SeedPlants) Phylogenetic Tree(s): OG_06_0002073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g52390.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AT4G17520 No alias Hyaluronan / mRNA binding family 0.03 Archaeplastida
LOC_Os05g45660.2 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 Archaeplastida
MA_9567870g0010 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.01 Archaeplastida
Pp3c7_26560V3.1 No alias Hyaluronan / mRNA binding family 0.01 Archaeplastida
Solyc08g007220.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e019955_P001 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 Archaeplastida
Zm00001e019958_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.1 Archaeplastida
Zm00001e026661_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
InterPro domains Description Start Stop
IPR019084 Stm1-like_N 1 82
IPR006861 HABP4_PAIRBP1-bd 161 271
No external refs found!