LOC_Os01g54890.1

Description : transcription factor (ERF)

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0000066 (SeedPlants) Phylogenetic Tree(s): OG_06_0000066_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g54890.1
Cluster	HCCA: Cluster_217

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00238800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00017p00232330	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00021p00185480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00023p00044590	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
AMTR_s00026p00180130	evm_27.TU.AmTr_v1...	Ethylene-responsive transcription factor ERF084...	0.03	Archaeplastida
AMTR_s00051p00204250	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AT1G22190	No alias	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT1G44830	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT1G46768	RAP2.1	related to AP2 1	0.02	Archaeplastida
AT1G71520	No alias	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT1G78080	RAP2.4	related to AP2 4	0.03	Archaeplastida
AT2G20880	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT2G25820	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT2G44840	ATERF13, ERF13, EREBP	ethylene-responsive element binding factor 13	0.04	Archaeplastida
AT3G15210	ATERF4, RAP2.5,...	ethylene responsive element binding factor 4	0.02	Archaeplastida
AT3G23230	No alias	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT3G23240	ERF1, ATERF1	ethylene response factor 1	0.04	Archaeplastida
AT4G13620	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT4G16750	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT4G17490	ERF-6-6, ERF6, ATERF6	ethylene responsive element binding factor 6	0.03	Archaeplastida
AT4G17500	ERF-1, ATERF-1	ethylene responsive element binding factor 1	0.08	Archaeplastida
AT4G18450	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT4G25470	FTQ4, CBF2,...	C-repeat/DRE binding factor 2	0.02	Archaeplastida
AT4G25490	DREB1B, ATCBF1, CBF1	C-repeat/DRE binding factor 1	0.02	Archaeplastida
AT4G27950	CRF4	cytokinin response factor 4	0.03	Archaeplastida
AT4G28140	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT4G36900	DEAR4, RAP2.10	related to AP2 10	0.03	Archaeplastida
AT4G39780	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT5G07310	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT5G13330	Rap2.6L	related to AP2 6l	0.03	Archaeplastida
AT5G21960	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT5G43410	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT5G61890	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
Cre08.g364400	No alias	No description available	0.02	Archaeplastida
GSVIVT01013914001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01013931001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013935001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01018270001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01018271001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01021060001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01025461001	No alias	External stimuli response.biotic...	0.03	Archaeplastida
GSVIVT01028314001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01034563001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Gb_01216	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_03782	No alias	transcription factor (ERF)	0.02	Archaeplastida
Gb_03783	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_06407	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_23321	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_41020	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_41836	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os06g11860.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os07g22730.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os08g36920.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
MA_10274g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_116185g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_16778g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_2040g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_3405g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_40048g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_4182g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_502153g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_7850076g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_81029g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_84578g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_928517g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_9905g0010	No alias	transcription factor (ERF)	0.04	Archaeplastida
Mp1g20040.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Mp7g13760.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
Pp3c12_25330V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
Pp3c16_13260V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c19_6370V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c1_7800V3.1	No alias	ethylene responsive element binding factor 1	0.02	Archaeplastida
Pp3c6_28370V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c9_2020V3.1	No alias	erf domain protein 9	0.02	Archaeplastida
Solyc01g009440.3.1	No alias	transcription factor (DREB)	0.04	Archaeplastida
Solyc01g090560.4.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc01g091760.3.1	No alias	transcription factor (ERF). transcription factor (ERN1)	0.04	Archaeplastida
Solyc02g077370.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc02g093130.3.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc03g026280.3.1	No alias	transcription factor (DREB). transcription factor (CBF/DREB1)	0.02	Archaeplastida
Solyc03g093540.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc03g093550.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc03g093610.1.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc04g007170.3.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc04g071770.3.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc04g072300.1.1	No alias	Ethylene-responsive transcription factor FZP OS=Oryza...	0.03	Archaeplastida
Solyc04g078640.3.1	No alias	transcription factor (DREB)	0.04	Archaeplastida
Solyc06g051840.1.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
Solyc06g063070.3.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc06g068360.3.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc06g082590.1.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc08g078170.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc08g078180.1.1	No alias	transcription factor (ERF)	0.07	Archaeplastida
Solyc08g078190.2.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc09g089910.1.1	No alias	transcription factor (ERF). transcription factor (DREB)	0.06	Archaeplastida
Solyc09g089920.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc09g089930.3.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc10g006130.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc11g006050.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc12g009240.1.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc12g042210.2.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e000611_P001	No alias	Ethylene-responsive transcription factor ERF073...	0.03	Archaeplastida
Zm00001e006604_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e006753_P003	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e007350_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e007352_P001	No alias	transcription factor (ERF)	0.04	Archaeplastida
Zm00001e013685_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e014659_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e015312_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e015869_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e019159_P001	No alias	transcription factor (ERF)	0.05	Archaeplastida
Zm00001e019837_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023686_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e023816_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e023870_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e024669_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e027350_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e029041_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e032032_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e033537_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e034661_P001	No alias	Ethylene-responsive transcription factor ERF115...	0.03	Archaeplastida
Zm00001e035811_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e041539_P001	No alias	transcription factor (ERF)	0.06	Archaeplastida
Zm00001e041620_P002	No alias	transcription factor (ERF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Neighborhood
BP	GO:0006099	tricarboxylic acid cycle	IEP	Neighborhood
BP	GO:0006101	citrate metabolic process	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006534	cysteine metabolic process	IEP	Neighborhood
BP	GO:0006535	cysteine biosynthetic process from serine	IEP	Neighborhood
BP	GO:0006563	L-serine metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Neighborhood
MF	GO:0009001	serine O-acetyltransferase activity	IEP	Neighborhood
BP	GO:0009069	serine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0009916	alternative oxidase activity	IEP	Neighborhood
BP	GO:0015977	carbon fixation	IEP	Neighborhood
MF	GO:0016412	serine O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016413	O-acetyltransferase activity	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
BP	GO:0016999	antibiotic metabolic process	IEP	Neighborhood
BP	GO:0019344	cysteine biosynthetic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	126	176

External Links

No external refs found!

LOC_Os01g54890.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation