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  5. LOC_Os01g57370.1

LOC_Os01g57370.1


Description : cyclic nucleotide-gated cation channel (CNGC)


Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0001872 (LandPlants) Phylogenetic Tree(s): OG_05_0001872_tree ,
OG_06_0007961 (SeedPlants) Phylogenetic Tree(s): OG_06_0007961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g57370.1
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
AT1G15990 CNGC7, ATCNGC7 cyclic nucleotide gated channel 7 0.02 Archaeplastida
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.03 Archaeplastida
AT2G28260 CNGC15, ATCNGC15 cyclic nucleotide-gated channel 15 0.03 Archaeplastida
AT2G46440 CNGC11, ATCNGC11 cyclic nucleotide-gated channels 0.02 Archaeplastida
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.03 Archaeplastida
AT5G14870 CNGC18, ATCNGC18 cyclic nucleotide-gated channel 18 0.04 Archaeplastida
Cpa|evm.model.tig00000851.9 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00021244.33 No alias Putative cyclic nucleotide-gated ion channel 9... 0.02 Archaeplastida
LOC_Os12g06570.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
LOC_Os12g28260.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida
MA_602116g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g14660.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.02 Archaeplastida
Pp3c15_11518V3.1 No alias Cyclic nucleotide-regulated ion channel family protein 0.04 Archaeplastida
Smo266723 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
Smo416791 No alias External stimuli response.temperature.temperature... 0.02 Archaeplastida
Solyc03g007250.1.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida
Solyc03g007260.3.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Solyc03g116850.3.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 488 574
IPR005821 Ion_trans_dom 162 387
No external refs found!