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  5. LOC_Os01g60010.1

LOC_Os01g60010.1


Description : Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana (sp|q9lfq4|pp383_arath : 423.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0000850 (SeedPlants) Phylogenetic Tree(s): OG_06_0000850_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g60010.1
Cluster HCCA: Cluster_347

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00263440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.05 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.06 Archaeplastida
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.05 Archaeplastida
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.04 Archaeplastida
GSVIVT01026463001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 Archaeplastida
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.06 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
LOC_Os01g05860.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_14956g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 Archaeplastida
MA_39587g0010 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 Archaeplastida
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.05 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 Archaeplastida
Solyc03g117570.3.1 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.06 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e005758_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
Zm00001e025816_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e026896_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 425 454
IPR002885 Pentatricopeptide_repeat 151 176
IPR002885 Pentatricopeptide_repeat 460 489
IPR002885 Pentatricopeptide_repeat 276 328
IPR002885 Pentatricopeptide_repeat 354 399
No external refs found!