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  5. LOC_Os01g65790.1

LOC_Os01g65790.1


Description : pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0001525 (LandPlants) Phylogenetic Tree(s): OG_05_0001525_tree ,
OG_06_0001343 (SeedPlants) Phylogenetic Tree(s): OG_06_0001343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g65790.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
AMTR_s00007p00101250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00021p00242180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.03 Archaeplastida
AMTR_s00038p00046180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00040p00233690 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00129p00031200 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00129p00044320 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00129p00070300 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AT1G02810 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.06 Archaeplastida
AT2G43050 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.05 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.1 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G02300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.05 Archaeplastida
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G09760 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.03 Archaeplastida
GSVIVT01016667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01018622001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01027652001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01028040001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01028264001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01031164001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01031667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01037344001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
GSVIVT01037348001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01037349001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_01422 No alias pectin methylesterase 0.03 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.07 Archaeplastida
Gb_05254 No alias pectin methylesterase 0.03 Archaeplastida
Gb_06354 No alias pectin methylesterase 0.04 Archaeplastida
Gb_10522 No alias pectin methylesterase 0.04 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.05 Archaeplastida
Gb_18512 No alias pectin methylesterase 0.02 Archaeplastida
Gb_24214 No alias pectin methylesterase 0.04 Archaeplastida
Gb_25439 No alias pectin methylesterase 0.05 Archaeplastida
Gb_28387 No alias pectin methylesterase 0.03 Archaeplastida
Gb_35881 No alias pectin methylesterase 0.05 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g13320.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os03g18860.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.06 Archaeplastida
LOC_Os04g54850.1 No alias pectin methylesterase 0.04 Archaeplastida
MA_10332149g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10372207g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_10377619g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10434127g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_10434786g0010 No alias No annotation 0.05 Archaeplastida
MA_10435891g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_10436266g0010 No alias Pectinesterase 3 OS=Citrus sinensis... 0.04 Archaeplastida
MA_130858g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_133919g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_18093g0010 No alias Pectinesterase 2.1 OS=Solanum lycopersicum... 0.05 Archaeplastida
MA_2017g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_26888g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_54974g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_84680g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_86577g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_906551g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_931259g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_9367g0020 No alias pectin methylesterase 0.02 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.05 Archaeplastida
Mp8g09330.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c10_25030V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c15_12280V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.06 Archaeplastida
Pp3c18_170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.04 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.07 Archaeplastida
Pp3c21_22110V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
Pp3c3_36450V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c4_22420V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
Pp3c8_3840V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Smo114014 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Smo266995 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
Solyc01g066360.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.03 Archaeplastida
Solyc01g098940.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc01g099950.1.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g099960.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.09 Archaeplastida
Solyc02g080200.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc02g080220.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc02g081990.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g078100.3.1 No alias pectin methylesterase 0.06 Archaeplastida
Solyc03g083840.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.08 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc05g047590.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc06g009180.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc06g051960.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.08 Archaeplastida
Solyc07g064190.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc09g075350.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e017514_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e019069_P001 No alias pectin methylesterase 0.09 Archaeplastida
Zm00001e022184_P001 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e025576_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e026790_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e035932_P003 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e041757_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 230 533
No external refs found!