LOC_Os01g69980.1


Description : transcription factor (TCP). TCP20 circadian clock activation factor


Gene families : OG0000415 (Archaeplastida) Phylogenetic Tree(s): OG0000415_tree ,
OG_05_0000215 (LandPlants) Phylogenetic Tree(s): OG_05_0000215_tree ,
OG_06_0000299 (SeedPlants) Phylogenetic Tree(s): OG_06_0000299_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g69980.1
Cluster HCCA: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00040760 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.morning element... 0.03 Archaeplastida
AT2G45680 No alias TCP family transcription factor 0.03 Archaeplastida
AT3G47620 AtTCP14, TCP14 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 0.04 Archaeplastida
AT5G51910 No alias TCP family transcription factor 0.02 Archaeplastida
MA_81710g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
Pp3c3_24660V3.1 No alias TCP family transcription factor 0.02 Archaeplastida
Solyc05g007420.2.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc08g080150.1.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc11g020670.1.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e003744_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e010190_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e015209_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.03 Archaeplastida
Zm00001e016271_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.03 Archaeplastida
Zm00001e018800_P001 No alias transcription factor (TCP). TCP20 circadian clock... 0.02 Archaeplastida
Zm00001e028426_P001 No alias transcription factor (TCP). TCP20 circadian clock... 0.02 Archaeplastida
Zm00001e036117_P001 No alias transcription factor (TCP) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 86 172
No external refs found!