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  5. AMTR_s00002p00260810

AMTR_s00002p00260810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.446

Description : DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica


Gene families : OG0005984 (Archaeplastida) Phylogenetic Tree(s): OG0005984_tree ,
OG_05_0007787 (LandPlants) Phylogenetic Tree(s): OG_05_0007787_tree ,
OG_06_0008854 (SeedPlants) Phylogenetic Tree(s): OG_06_0008854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00260810
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
AT3G11960 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.06 Archaeplastida
MA_129261g0030 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8503923g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c24_19520V3.1 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 Archaeplastida
Solyc10g080630.2.1 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e033071_P001 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 965 1036
IPR004871 Cleavage/polyA-sp_fac_asu_C 1108 1353
No external refs found!