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  5. LOC_Os02g07170.1

LOC_Os02g07170.1


Description : G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000101 (LandPlants) Phylogenetic Tree(s): OG_05_0000101_tree ,
OG_06_0000391 (SeedPlants) Phylogenetic Tree(s): OG_06_0000391_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g07170.1
Cluster HCCA: Cluster_334

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263730 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00021p00013790 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00022p00190540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00119p00095480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AT3G04030 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
AT4G04605 No alias No description available 0.04 Archaeplastida
AT5G06800 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
AT5G45580 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
GSVIVT01005342001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01009589001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
LOC_Os03g03760.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os03g20900.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os06g45890.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os08g33050.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os10g39550.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_10432937g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_138039g0010 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_335624g0020 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_52379g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_6619111g0010 No alias G2-like GARP transcription factor 0.02 Archaeplastida
MA_8183372g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_937875g0010 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Mp4g08700.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Pp3c10_13030V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c17_23560V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c19_2940V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c21_2850V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c22_8217V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c24_7590V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c26_3290V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Pp3c3_14670V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c3_34700V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c4_23130V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c8_16910V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Smo423935 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Smo438638 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc02g076670.3.1 No alias Putative Myb family transcription factor At1g14600... 0.05 Archaeplastida
Solyc02g080860.3.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc07g045000.4.1 No alias Putative Myb family transcription factor At1g14600... 0.03 Archaeplastida
Solyc10g085620.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e000237_P002 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e004125_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e005797_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e007585_P001 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e013626_P001 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e014339_P001 No alias Putative Myb family transcription factor At1g14600... 0.02 Archaeplastida
Zm00001e015514_P001 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e023282_P002 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e030364_P002 No alias G2-like GARP transcription factor 0.01 Archaeplastida
Zm00001e037761_P001 No alias G2-like GARP transcription factor 0.05 Archaeplastida
Zm00001e041868_P002 No alias G2-like GARP transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 34 85
No external refs found!