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  5. AMTR_s00002p00265060

AMTR_s00002p00265060 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.492

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0011480 (Archaeplastida) Phylogenetic Tree(s): OG0011480_tree ,
OG_05_0011365 (LandPlants) Phylogenetic Tree(s): OG_05_0011365_tree ,
OG_06_0011394 (SeedPlants) Phylogenetic Tree(s): OG_06_0011394_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00265060
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018111001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
LOC_Os01g56690.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os03g53020.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e005624_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e028965_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 63 109
No external refs found!