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  5. LOC_Os02g11890.1

LOC_Os02g11890.1


Description : SYP1-group Qa-type SNARE component


Gene families : OG0000372 (Archaeplastida) Phylogenetic Tree(s): OG0000372_tree ,
OG_05_0000804 (LandPlants) Phylogenetic Tree(s): OG_05_0000804_tree ,
OG_06_0000894 (SeedPlants) Phylogenetic Tree(s): OG_06_0000894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g11890.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00050990 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
AMTR_s00103p00119740 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
AMTR_s00111p00136390 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.06 Archaeplastida
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.03 Archaeplastida
AT3G03800 ATSYP131, SYP131 syntaxin of plants 131 0.05 Archaeplastida
AT4G03330 SYP123, ATSYP123 syntaxin of plants 123 0.1 Archaeplastida
GSVIVT01030578001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.05 Archaeplastida
Mp4g20670.1 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Pp3c14_10430V3.1 No alias syntaxin of plants 124 0.02 Archaeplastida
Pp3c1_23940V3.1 No alias syntaxin of plants 124 0.02 Archaeplastida
Smo25349 No alias Vesicle trafficking.SNARE target membrane recognition... 0.04 Archaeplastida
Smo74098 No alias Vesicle trafficking.SNARE target membrane recognition... 0.08 Archaeplastida
Smo93442 No alias Vesicle trafficking.SNARE target membrane recognition... 0.06 Archaeplastida
Solyc12g005580.2.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 40 245
IPR000727 T_SNARE_dom 247 298
No external refs found!