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  5. LOC_Os02g13660.1

LOC_Os02g13660.1


Description : Protodermal factor 1 OS=Arabidopsis thaliana (sp|q9s728|pdf1_arath : 94.0)


Gene families : OG0001668 (Archaeplastida) Phylogenetic Tree(s): OG0001668_tree ,
OG_05_0001072 (LandPlants) Phylogenetic Tree(s): OG_05_0001072_tree ,
OG_06_0004253 (SeedPlants) Phylogenetic Tree(s): OG_06_0004253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g13660.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00030870 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00068p00158450 evm_27.TU.AmTr_v1... Protodermal factor 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00858p00001360 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
Gb_40194 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_111671g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp3g10620.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g22090.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c7_3869V3.1 No alias No annotation 0.04 Archaeplastida
Smo437656 No alias No description available 0.02 Archaeplastida
Solyc07g055950.3.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc12g011010.2.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e014410_P001 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e016528_P003 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e019923_P004 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e030674_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e030749_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0030597 RNA glycosylase activity IEP Neighborhood
MF GO:0030598 rRNA N-glycosylase activity IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051248 negative regulation of protein metabolic process IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!