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  5. LOC_Os02g19450.1

LOC_Os02g19450.1


Description : Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica (sp|q7f9i1|clpc1_orysj : 414.0)


Gene families : OG0000276 (Archaeplastida) Phylogenetic Tree(s): OG0000276_tree ,
OG_05_0080729 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0069592 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g19450.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AT5G51070 SAG15, CLPD, ERD1 Clp ATPase 0.03 Archaeplastida
GSVIVT01007880001 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
GSVIVT01008636001 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Gb_36602 No alias chaperone component ClpD of chloroplast Clp-type protease complex 0.04 Archaeplastida
LOC_Os02g32520.1 No alias chaperone component ClpD of chloroplast Clp-type protease complex 0.06 Archaeplastida
Smo170696 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Smo174539 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Solyc03g117950.3.1 No alias chaperone component ClpD of chloroplast Clp-type protease complex 0.05 Archaeplastida
Solyc06g082560.3.1 No alias cytosolic chaperone (Hsp101) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR019489 Clp_ATPase_C 555 635
IPR003959 ATPase_AAA_core 95 230
IPR003959 ATPase_AAA_core 376 548
No external refs found!