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  5. AMTR_s00002p00269670

AMTR_s00002p00269670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.554

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG0002284 (Archaeplastida) Phylogenetic Tree(s): OG0002284_tree ,
OG_05_0002131 (LandPlants) Phylogenetic Tree(s): OG_05_0002131_tree ,
OG_06_0002300 (SeedPlants) Phylogenetic Tree(s): OG_06_0002300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00269670
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.11 Archaeplastida
Cpa|evm.model.tig00000025.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Cre10.g417700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
GSVIVT01034555001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Gb_35746 No alias component RPL3 of LSU proteome component 0.04 Archaeplastida
LOC_Os11g06750.1 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida
LOC_Os12g07010.1 No alias component RPL3 of LSU proteome component 0.11 Archaeplastida
MA_10432758g0010 No alias component RPL3 of LSU proteome component 0.11 Archaeplastida
MA_124178g0010 No alias component RPL3 of LSU proteome component 0.09 Archaeplastida
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.09 Archaeplastida
Pp3c10_25460V3.1 No alias R-protein L3 B 0.05 Archaeplastida
Pp3c5_27000V3.1 No alias R-protein L3 B 0.04 Archaeplastida
Pp3c5_27030V3.1 No alias R-protein L3 B 0.03 Archaeplastida
Smo270706 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Solyc01g103510.4.1 No alias component RPL3 of LSU proteome component 0.02 Archaeplastida
Solyc01g104590.3.1 No alias component RPL3 of LSU proteome component 0.1 Archaeplastida
Zm00001e001224_P002 No alias component RPL3 of LSU proteome component 0.1 Archaeplastida
Zm00001e008122_P001 No alias component RPL3 of LSU proteome component 0.11 Archaeplastida
Zm00001e008127_P001 No alias component RPL3 of LSU proteome component 0.09 Archaeplastida
Zm00001e009061_P001 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida
Zm00001e009065_P002 No alias component RPL3 of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0015093 ferrous iron transmembrane transporter activity IEP Neighborhood
BP GO:0015684 ferrous iron transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0072509 divalent inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 24 317
No external refs found!