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  5. LOC_Os02g32430.1

LOC_Os02g32430.1


Description : WD repeat-containing protein LWD1 OS=Arabidopsis thaliana (sp|q9lpv9|lwd1_arath : 499.0)


Gene families : OG0001679 (Archaeplastida) Phylogenetic Tree(s): OG0001679_tree ,
OG_05_0001586 (LandPlants) Phylogenetic Tree(s): OG_05_0001586_tree ,
OG_06_0001588 (SeedPlants) Phylogenetic Tree(s): OG_06_0001588_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g32430.1
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271900 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.morning element... 0.03 Archaeplastida
AMTR_s00016p00252480 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.morning element... 0.03 Archaeplastida
AMTR_s00040p00131380 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.morning element... 0.03 Archaeplastida
LOC_Os02g45810.1 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.04 Archaeplastida
Solyc04g082470.3.1 No alias LWD circadian clock activation factor 0.03 Archaeplastida
Zm00001e014684_P001 No alias WD repeat-containing protein LWD1 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e015450_P001 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019211 phosphatase activator activity IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 209 240
IPR001680 WD40_repeat 314 345
No external refs found!