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  5. LOC_Os02g32660.1

LOC_Os02g32660.1


Description : starch branching enzyme


Gene families : OG0001006 (Archaeplastida) Phylogenetic Tree(s): OG0001006_tree ,
OG_05_0002115 (LandPlants) Phylogenetic Tree(s): OG_05_0002115_tree ,
OG_06_0006934 (SeedPlants) Phylogenetic Tree(s): OG_06_0006934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g32660.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT2G36390 SBE2.1, BE3 starch branching enzyme 2.1 0.02 Archaeplastida
Cre06.g289850 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Cre10.g444700 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
GSVIVT01008673001 No alias Carbohydrate metabolism.starch... 0.01 Archaeplastida
GSVIVT01033801001 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Gb_33676 No alias starch branching enzyme 0.03 Archaeplastida
MA_10431704g0010 No alias 1,4-alpha-glucan-branching enzyme 2-2,... 0.02 Archaeplastida
MA_15024g0020 No alias 1,4-alpha-glucan-branching enzyme 1,... 0.02 Archaeplastida
Pp3c5_8810V3.1 No alias starch branching enzyme 2.1 0.02 Archaeplastida
Solyc09g009190.4.1 No alias starch branching enzyme 0.03 Archaeplastida
Zm00001e008234_P001 No alias starch branching enzyme 0.02 Archaeplastida
Zm00001e013321_P002 No alias starch branching enzyme 0.04 Archaeplastida
Zm00001e014711_P001 No alias starch branching enzyme 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 340 411
IPR006048 A-amylase/branching_C 729 822
IPR004193 Glyco_hydro_13_N 191 274
No external refs found!