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  5. LOC_Os02g40750.1

LOC_Os02g40750.1


Description : Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana (sp|q9c501|ppr70_arath : 511.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014016 (LandPlants) Phylogenetic Tree(s): OG_05_0014016_tree ,
OG_06_0013937 (SeedPlants) Phylogenetic Tree(s): OG_06_0013937_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g40750.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00011p00195950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22150,... 0.02 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00066p00131520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT2G20540 MEF21 mitochondrial editing factor 21 0.03 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT3G22690 No alias CONTAINS InterPro DOMAIN/s: Protein of unknown function... 0.02 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01003453001 No alias RNA processing.organelle machineries.RNA... 0.01 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
GSVIVT01010654001 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.02 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.02 Archaeplastida
GSVIVT01024912001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.01 Archaeplastida
GSVIVT01028697001 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.01 Archaeplastida
GSVIVT01031849001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
GSVIVT01035920001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.01 Archaeplastida
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_14617 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
LOC_Os02g06880.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
LOC_Os06g49185.1 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.01 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 Archaeplastida
MA_19816g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_210823g0010 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.02 Archaeplastida
MA_211508g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.01 Archaeplastida
MA_22485g0010 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
MA_2473g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_25729g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.01 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_7691g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
MA_86894g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Pp3c19_930V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo111982 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Solyc01g091610.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.02 Archaeplastida
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.01 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc03g115570.1.1 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.01 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.02 Archaeplastida
Solyc04g016540.2.1 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.01 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
Solyc05g023900.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc06g082880.2.1 No alias RNA editing factor (MEF13) 0.02 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.01 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.03 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.02 Archaeplastida
Solyc09g082400.2.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.02 Archaeplastida
Solyc11g005960.1.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
Solyc11g007230.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Solyc11g066920.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc11g071370.1.1 No alias RNA editing factor (CLB19) 0.02 Archaeplastida
Solyc12g099620.1.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.02 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.03 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Zm00001e007600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.05 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.02 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 311
IPR002885 Pentatricopeptide_repeat 385 410
IPR002885 Pentatricopeptide_repeat 179 206
IPR002885 Pentatricopeptide_repeat 210 256
IPR002885 Pentatricopeptide_repeat 313 357
No external refs found!