LOC_Os02g42320.3

Description : component alpha type-2 of 26S proteasome

Gene families : OG0002864 (Archaeplastida) Phylogenetic Tree(s): OG0002864_tree ,
OG_05_0002731 (LandPlants) Phylogenetic Tree(s): OG_05_0002731_tree ,
OG_06_0002532 (SeedPlants) Phylogenetic Tree(s): OG_06_0002532_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g42320.3
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00056790	evm_27.TU.AmTr_v1...	Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana	0.05	Archaeplastida
AT1G16470	PAB1	proteasome subunit PAB1	0.04	Archaeplastida
AT1G79210	No alias	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.04	Archaeplastida
Cpa\|evm.model.tig00021357.40	No alias	Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana	0.06	Archaeplastida
Cre08.g373250	No alias	Protein degradation.26S proteasome.20S core...	0.08	Archaeplastida
Mp3g16380.1	No alias	component alpha type-2 of 26S proteasome	0.04	Archaeplastida
Pp3c11_10390V3.1	No alias	proteasome subunit PAB1	0.06	Archaeplastida
Pp3c7_18410V3.1	No alias	proteasome subunit PAB1	0.02	Archaeplastida
Smo177615	No alias	Protein degradation.26S proteasome.20S core...	0.03	Archaeplastida
Solyc07g055080.3.1	No alias	component alpha type-2 of 26S proteasome	0.03	Archaeplastida
Solyc10g008010.4.1	No alias	component alpha type-2 of 26S proteasome	0.03	Archaeplastida
Zm00001e023061_P001	No alias	component alpha type-2 of 26S proteasome	0.02	Archaeplastida
Zm00001e023064_P001	No alias	component alpha type-2 of 26S proteasome	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Neighborhood
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
CC	GO:0000502	proteasome complex	IEP	Neighborhood
MF	GO:0000976	transcription regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0001012	RNA polymerase II regulatory region DNA binding	IEP	Neighborhood
MF	GO:0001067	regulatory region nucleic acid binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
BP	GO:0006448	regulation of translational elongation	IEP	Neighborhood
BP	GO:0006449	regulation of translational termination	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Neighborhood
MF	GO:0032422	purine-rich negative regulatory element binding	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Neighborhood
MF	GO:0043022	ribosome binding	IEP	Neighborhood
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
MF	GO:0044212	transcription regulatory region DNA binding	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
BP	GO:0045727	positive regulation of translation	IEP	Neighborhood
BP	GO:0045901	positive regulation of translational elongation	IEP	Neighborhood
BP	GO:0045905	positive regulation of translational termination	IEP	Neighborhood
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
CC	GO:0097525	spliceosomal snRNP complex	IEP	Neighborhood
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
CC	GO:0120114	Sm-like protein family complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	64	246

External Links

No external refs found!

LOC_Os02g42320.3

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation