LOC_Os02g46680.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000448 (LandPlants) Phylogenetic Tree(s): OG_05_0000448_tree ,
OG_06_0009042 (SeedPlants) Phylogenetic Tree(s): OG_06_0009042_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g46680.1
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00254310	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00048p00046670	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
AMTR_s00055p00102180	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.11	Archaeplastida
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00145p00075460	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AT1G02530	PGP12	P-glycoprotein 12	0.04	Archaeplastida
AT1G27940	PGP13	P-glycoprotein 13	0.07	Archaeplastida
AT1G28010	ABCB14, ATABCB14, PGP14	P-glycoprotein 14	0.08	Archaeplastida
AT2G36910	PGP1, ABCB1, ATPGP1	ATP binding cassette subfamily B1	0.05	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G28360	PGP16	P-glycoprotein 16	0.04	Archaeplastida
AT3G28415	No alias	ABC transporter family protein	0.04	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.03	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.12	Archaeplastida
AT5G46540	PGP7	P-glycoprotein 7	0.05	Archaeplastida
GSVIVT01009946001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01021365001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01033645001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_08616	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_10211	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_11202	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_13906	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Gb_13908	No alias	ABC transporter B family member 10 OS=Arabidopsis...	0.08	Archaeplastida
Gb_27347	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32487	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_36497	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_36503	No alias	serine carboxypeptidase. subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os05g47500.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_10431815g0020	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.04	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.08	Archaeplastida
MA_40328g0010	No alias	ABC transporter B family member 20 OS=Arabidopsis...	0.03	Archaeplastida
MA_635039g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_636449g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_79399g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Mp1g26440.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp2g02910.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.04	Archaeplastida
Mp2g02920.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	Archaeplastida
Mp2g06270.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Mp2g21430.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Pp3c1_34680V3.1	No alias	P-glycoprotein 10	0.03	Archaeplastida
Pp3c1_7210V3.1	No alias	ATP binding cassette subfamily B19	0.01	Archaeplastida
Pp3c21_18190V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Pp3c6_7260V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Pp3c9_13390V3.1	No alias	P-glycoprotein 6	0.03	Archaeplastida
Smo148837	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Smo169182	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo230688	No alias	Solute transport.primary active transport.ABC...	0.06	Archaeplastida
Smo231714	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Solyc02g087870.3.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Archaeplastida
Solyc03g005860.4.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc03g093650.3.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc03g122070.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc06g009280.1.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc08g076720.4.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e003866_P001	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Zm00001e014797_P002	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Zm00001e017444_P002	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Zm00001e020770_P002	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.1	Archaeplastida
Zm00001e041008_P003	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.05	Archaeplastida
Zm00001e041760_P001	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
BP	GO:0052646	alditol phosphate metabolic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	697	967
IPR011527	ABC1_TM_dom	58	324
IPR003439	ABC_transporter-like	1033	1181
IPR003439	ABC_transporter-like	394	543

External Links

No external refs found!

LOC_Os02g46680.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation