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  5. LOC_Os02g47870.1

LOC_Os02g47870.1


Description : RUB ligase E3 protein (RBX1). UBQ-E2-recruiting component RBX1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0002912 (Archaeplastida) Phylogenetic Tree(s): OG0002912_tree ,
OG_05_0003432 (LandPlants) Phylogenetic Tree(s): OG_05_0003432_tree ,
OG_06_0003522 (SeedPlants) Phylogenetic Tree(s): OG_06_0003522_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47870.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00244120 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
Cre12.g543450 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.02 Archaeplastida
MA_10427994g0010 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.02 Archaeplastida
Mp4g09120.1 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 Archaeplastida
Solyc12g009120.2.1 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 Archaeplastida
Zm00001e017143_P001 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.05 Archaeplastida
Zm00001e023339_P001 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 46 104
No external refs found!