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Description : CRWN nuclear lamina lamin-like protein
Gene families : OG0002164 (Archaeplastida) Phylogenetic Tree(s): OG0002164_tree ,
OG_05_0001522 (LandPlants) Phylogenetic Tree(s): OG_05_0001522_tree ,
OG_06_0001206 (SeedPlants) Phylogenetic Tree(s): OG_06_0001206_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os02g48010.1 | |
| Cluster | HCCA: Cluster_49 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00024p00252300 | evm_27.TU.AmTr_v1... | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | Archaeplastida | |
| AMTR_s00044p00204550 | evm_27.TU.AmTr_v1... | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.05 | Archaeplastida | |
| AT1G13220 | LINC2 | nuclear matrix constituent protein-related | 0.03 | Archaeplastida | |
| AT1G67230 | LINC1 | little nuclei1 | 0.06 | Archaeplastida | |
| AT1G68790 | LINC3 | little nuclei3 | 0.11 | Archaeplastida | |
| AT5G65770 | LINC4 | little nuclei4 | 0.03 | Archaeplastida | |
| AT5G65780 | ATBCAT-5 | branched-chain amino acid aminotransferase 5 /... | 0.08 | Archaeplastida | |
| GSVIVT01007428001 | No alias | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | Archaeplastida | |
| GSVIVT01011972001 | No alias | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.04 | Archaeplastida | |
| GSVIVT01031076001 | No alias | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.07 | Archaeplastida | |
| Gb_03736 | No alias | CRWN nuclear lamina lamin-like protein | 0.03 | Archaeplastida | |
| Pp3c2_34830V3.1 | No alias | little nuclei1 | 0.01 | Archaeplastida | |
| Solyc02g089800.3.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.11 | Archaeplastida | |
| Solyc02g091960.4.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.11 | Archaeplastida | |
| Solyc03g045050.4.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.09 | Archaeplastida | |
| Zm00001e019705_P002 | No alias | CRWN nuclear lamina lamin-like protein | 0.07 | Archaeplastida | |
| Zm00001e023357_P001 | No alias | CRWN nuclear lamina lamin-like protein | 0.16 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
| BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| MF | GO:0004000 | adenosine deaminase activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
| BP | GO:0006382 | adenosine to inosine editing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016458 | gene silencing | IEP | Neighborhood |
| BP | GO:0016553 | base conversion or substitution editing | IEP | Neighborhood |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
| MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
| CC | GO:0031011 | Ino80 complex | IEP | Neighborhood |
| BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| CC | GO:0033202 | DNA helicase complex | IEP | Neighborhood |
| CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
| CC | GO:0044454 | nuclear chromosome part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| CC | GO:0097346 | INO80-type complex | IEP | Neighborhood |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| CC | GO:1904949 | ATPase complex | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |