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  5. LOC_Os02g49620.1

LOC_Os02g49620.1


Description : pre-40S ribosomal subunit assembly factor (RRP7)


Gene families : OG0006112 (Archaeplastida) Phylogenetic Tree(s): OG0006112_tree ,
OG_05_0008042 (LandPlants) Phylogenetic Tree(s): OG_05_0008042_tree ,
OG_06_0008839 (SeedPlants) Phylogenetic Tree(s): OG_06_0008839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g49620.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AT5G38720 No alias unknown protein; Has 13419 Blast hits to 9093 proteins... 0.08 Archaeplastida
Cpa|evm.model.tig00000704.18 No alias No description available 0.01 Archaeplastida
GSVIVT01036491001 No alias No description available 0.04 Archaeplastida
Gb_30657 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.03 Archaeplastida
MA_10434132g0020 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.04 Archaeplastida
Smo420728 No alias No description available 0.05 Archaeplastida
Smo422020 No alias No description available 0.06 Archaeplastida
Solyc02g089600.3.1 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.03 Archaeplastida
Solyc03g046350.3.1 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.05 Archaeplastida
Zm00001e015713_P002 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR024326 RRP7 243 366
No external refs found!