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  5. LOC_Os02g57980.1

LOC_Os02g57980.1


Description : DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica (sp|q6k7r9|rh48_orysj : 1548.0)


Gene families : OG0001868 (Archaeplastida) Phylogenetic Tree(s): OG0001868_tree ,
OG_05_0002062 (LandPlants) Phylogenetic Tree(s): OG_05_0002062_tree ,
OG_06_0001848 (SeedPlants) Phylogenetic Tree(s): OG_06_0001848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g57980.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.03 Archaeplastida
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Cre16.g661900 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.01 Archaeplastida
Mp7g07740.1 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 Archaeplastida
Zm00001e016261_P001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e020446_P003 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 367 544
IPR001650 Helicase_C 588 694
No external refs found!