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  5. LOC_Os02g58540.1

LOC_Os02g58540.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0002315 (SeedPlants) Phylogenetic Tree(s): OG_06_0002315_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g58540.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00009p00172890 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT1G74620 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.01 Archaeplastida
GSVIVT01007793001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os02g49710.1 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.05 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10145129g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_133839g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_7120568g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Pp3c14_14600V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Smo448587 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g095810.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Solyc10g081780.3.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.02 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 98 141
No external refs found!