AMTR_s00003p00198650 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.183

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0002274 (SeedPlants) Phylogenetic Tree(s): OG_06_0002274_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00003p00198650
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AT1G05650	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT2G43870	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT2G43880	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G26610	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01017644001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01033362001	No alias	Cell wall.pectin.modification and...	0.03	Archaeplastida
GSVIVT01033364001	No alias	Cell wall.pectin.modification and...	0.03	Archaeplastida
LOC_Os01g43490.1	No alias	Polygalacturonase OS=Prunus persica...	0.02	Archaeplastida
LOC_Os03g59330.1	No alias	polygalacturonase (QRT2)	0.02	Archaeplastida
LOC_Os05g46510.1	No alias	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os05g46520.1	No alias	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.01	Archaeplastida
LOC_Os05g50260.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os11g14410.1	No alias	Polygalacturonase OS=Prunus persica...	0.02	Archaeplastida
Smo78038	No alias	Cell wall.pectin.modification and...	0.06	Archaeplastida
Solyc01g087280.2.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g067630.3.1	No alias	Polygalacturonase OS=Prunus persica...	0.03	Archaeplastida
Solyc02g067640.3.1	No alias	Polygalacturonase OS=Prunus persica...	0.04	Archaeplastida
Solyc04g015530.3.1	No alias	polygalacturonase (QRT2)	0.03	Archaeplastida
Solyc08g014540.1.1	No alias	Polygalacturonase OS=Prunus persica...	0.03	Archaeplastida
Solyc12g019120.2.1	No alias	Polygalacturonase OS=Prunus persica...	0.03	Archaeplastida
Solyc12g019180.2.1	No alias	Polygalacturonase OS=Prunus persica...	0.04	Archaeplastida
Solyc12g019230.2.1	No alias	Polygalacturonase OS=Prunus persica...	0.02	Archaeplastida
Solyc12g096730.3.1	No alias	Polygalacturonase OS=Prunus persica...	0.01	Archaeplastida
Solyc12g096740.1.1	No alias	Polygalacturonase OS=Prunus persica...	0.03	Archaeplastida
Solyc12g096750.2.1	No alias	Polygalacturonase OS=Prunus persica...	0.03	Archaeplastida
Zm00001e026160_P001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e026600_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005542	folic acid binding	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008517	folic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008518	folate:anion antiporter activity	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0015301	anion:anion antiporter activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
MF	GO:0042887	amide transmembrane transporter activity	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0060590	ATPase regulator activity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
MF	GO:0072341	modified amino acid binding	IEP	Neighborhood
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Neighborhood
MF	GO:0099516	ion antiporter activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	179	492

External Links

No external refs found!

AMTR_s00003p00198650 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation