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  5. LOC_Os03g03100.1

LOC_Os03g03100.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g03100.1
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AT5G51870 AGL71 AGAMOUS-like 71 0.04 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.09 Archaeplastida
LOC_Os02g49840.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_101463g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_126898g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_128164g0010 No alias No annotation 0.02 Archaeplastida
MA_133455g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_138440g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_141872g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_16120g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_19007g0010 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.09 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_35712g0010 No alias transcription factor (MADS/AGL) 0.12 Archaeplastida
MA_45349g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_57493g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_69370g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_7858089g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Pp3c1_39780V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.01 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Solyc01g106170.4.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc03g006830.3.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.08 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.02 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!