LOC_Os03g05160.1

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g05160.1
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00253850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
AMTR_s00017p00242860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00039p00112210	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
AMTR_s00057p00121410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT2G28340	GATA13	GATA transcription factor 13	0.03	Archaeplastida
AT4G32890	GATA9	GATA transcription factor 9	0.02	Archaeplastida
AT4G34680	GATA3	GATA transcription factor 3	0.02	Archaeplastida
GSVIVT01016265001	No alias	GATA transcription factor 8 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_06864	No alias	transcription factor (GATA)	0.02	Archaeplastida
Gb_24639	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os05g44400.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os05g49280.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_103421g0030	No alias	transcription factor (GATA)	0.03	Archaeplastida
Pp3c10_22600V3.1	No alias	GATA transcription factor 5	0.02	Archaeplastida
Pp3c3_25840V3.1	No alias	No annotation	0.02	Archaeplastida
Smo69510	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Solyc01g110310.3.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc02g062760.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc02g084590.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc08g066510.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc09g075610.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc10g018560.2.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e016165_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e027439_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e029060_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e037876_P002	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e039468_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e039469_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005811	lipid droplet	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0006875	cellular metal ion homeostasis	IEP	Neighborhood
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
BP	GO:0030026	cellular manganese ion homeostasis	IEP	Neighborhood
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
BP	GO:0055065	metal ion homeostasis	IEP	Neighborhood
BP	GO:0055071	manganese ion homeostasis	IEP	Neighborhood
BP	GO:0055076	transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
BP	GO:0098771	inorganic ion homeostasis	IEP	Neighborhood
MF	GO:1901681	sulfur compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	124	157

External Links

No external refs found!

LOC_Os03g05160.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation